BioConductor

ABSSeq 1.8.1

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

This package can be loaded by Renjin but 18 out 20 tests failed.

Dependencies

locfit 1.5-9.1 limma 3.28.21

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>ABSSeq</artifactId>
    <version>1.8.1-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:ABSSeq')

Test Results

This package was last tested against Renjin 0.8.2346 on Mar 18, 2017.

Source

R

Release History