BioConductor

ABSSeq 1.33.2

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Released Jan 31, 2018 by Wentao Yang

This package can be loaded by Renjin but 11 out 25 tests failed.

Dependencies

locfit 1.5-9.1 limma 3.35.14

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>ABSSeq</artifactId>
    <version>1.33.2-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:ABSSeq')

Test Results

This package was last tested against Renjin 0.9.2622 on Apr 7, 2018.

Source

R

Release History