ADaCGH2 2.20.0

Analysis of big data from aCGH experiments using parallel computing and ff objects

Released Apr 19, 2018 by Ramon Diaz-Uriarte

This package cannot yet be used with Renjin it depends on other packages which are not available: ff 2.2-14 and ffbase 0.12.3


ff 2.2-14 ffbase 0.12.3 snapCGH 1.50.0 DNAcopy 1.54.0 cluster 2.0.7-1 tilingArray 1.58.0 GLAD 2.44.0 waveslim 1.7.5 bit 1.1-14 aCGH 1.58.0

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.



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