BioConductor

ASGSCA 1.6.0

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Released Jul 30, 2014 by Hela Romdhani, Stepan Grinek, Heungsun Hwang and Aurelie Labbe.

This package can be loaded by Renjin but all tests failed.

Dependencies

Matrix 1.1-4 MASS 7.3-33

The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>ASGSCA</artifactId>
    <version>1.6.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:ASGSCA')

Test Results

This package was last tested against Renjin 0.8.2346 on Mar 18, 2017.

Source

R

Release History