BioConductor

ASSIGN 1.16.0

Adaptive Signature Selection and InteGratioN (ASSIGN)

Released Oct 30, 2014 by Ying Shen

Dependencies

sva 3.28.0 ggplot2 3.0.0 Rlab 2.15.1 gplots 3.0.1 msm 1.6.6

ASSIGN is a computational tool to evaluate the pathway deregulation/activation status in individual patient samples. ASSIGN employs a flexible Bayesian factor analysis approach that adapts predetermined pathway signatures derived either from knowledge-based literature or from perturbation experiments to the cell-/tissue-specific pathway signatures. The deregulation/activation level of each context-specific pathway is quantified to a score, which represents the extent to which a patient sample encompasses the pathway deregulation/activation signature.

Source

Release History

• 1.16.0
• 1.15.3
• 1.15.2
• 1.15.1
• 1.12.0
• 1.8.0
• 1.6.0
• 1.4.0