BioConductor

AffyRNADegradation 1.18.0

Analyze and correct probe positional bias in microarray data due to RNA degradation

Released Sep 26, 2012 by Mario Fasold

This package is available for Renjin and there are no known compatibility issues.

Dependencies

affy 1.50.0

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>AffyRNADegradation</artifactId>
    <version>1.18.0-b4</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:AffyRNADegradation')

Test Results

This package was last tested against Renjin 0.8.2346 on Mar 19, 2017.

Source

R

Release History