BioConductor

AllelicImbalance 1.10.2

Investigates allele specific expression

Released Apr 2, 2016 by Jesper R Gadin, Lasse Folkersen

This package cannot yet be used with Renjin it depends on other packages which are not available: VariantAnnotation 1.18.7, BSgenome 1.40.1, GenomicAlignments 1.8.4, seqinr 3.1-3, GenomicFeatures 1.24.5, Gviz 1.16.5, Rsamtools 1.24.0, and SummarizedExperiment 1.2.3

Dependencies

GenomicAlignments 1.8.4 GenomicFeatures 1.24.5 SummarizedExperiment 1.2.3 BSgenome 1.40.1 seqinr 3.1-3 VariantAnnotation 1.18.7 Gviz 1.16.5 Rsamtools 1.24.0 GenomeInfoDb 1.8.7 Biostrings 2.40.2 AnnotationDbi 1.34.4 lattice 0.20-33 IRanges 2.6.1 GenomicRanges 1.24.3 gridExtra 2.2.1 S4Vectors 0.10.3 BiocGenerics 0.18.0 latticeExtra 0.6-28

Provides a framework for allelic specific expression investigation using RNA-seq data.

Source

R

Release History