BioConductor

AllelicImbalance 1.14.0

Investigates Allele Specific Expression

Released May 12, 2016 by Jesper R Gadin, Lasse Folkersen

This package cannot yet be used with Renjin it depends on other packages which are not available: VariantAnnotation 1.22.3, BSgenome 1.44.2, Gviz 1.20.0, seqinr 3.4-5, and GenomicFeatures 1.28.5

Dependencies

GenomicFeatures 1.28.5 Gviz 1.20.0 BSgenome 1.44.2 VariantAnnotation 1.22.3 seqinr 3.4-5 Biostrings 2.44.2 lattice 0.20-35 GenomicAlignments 1.12.2 AnnotationDbi 1.38.2 IRanges 2.10.5 nlme 3.1-131 SummarizedExperiment 1.6.5 latticeExtra 0.6-28 BiocGenerics 0.22.1 GenomicRanges 1.28.6 S4Vectors 0.14.7 gridExtra 2.3 Rsamtools 1.28.0 GenomeInfoDb 1.12.3

Provides a framework for allelic specific expression investigation using RNA-seq data.

Source

R

Release History