BioConductor

AneuFinder 1.4.0

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

This package cannot yet be used with Renjin it depends on other packages which are not available: AneuFinderData, ReorderCluster 1.0, and bamsignals 1.8.0

Dependencies

bamsignals 1.8.0 ReorderCluster 1.0 Biostrings 2.44.2 reshape2 1.4.2 ggdendro 0.1-20 GenomicAlignments 1.12.2 IRanges 2.10.5 cowplot 0.8.0 DNAcopy 1.50.1 foreach 1.4.3 BiocGenerics 0.22.1 GenomicRanges 1.28.6 S4Vectors 0.14.7 doParallel 1.0.11 ggrepel 0.7.0 Rsamtools 1.28.0 GenomeInfoDb 1.12.3 ggplot2 2.2.1 mclust 5.3

This package implements functions for CNV calling, plotting, export and analysis from whole-genome single cell sequencing data.

Source

R
C
C++

Release History