BioConductor

AneuFinder 1.7.4

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Released Feb 10, 2018 by Aaron Taudt

This package cannot yet be used with Renjin it depends on other packages which are not available: bamsignals 1.11.0 and ecp 3.1.0

Dependencies

bamsignals 1.11.0 ecp 3.1.0 ggrepel 0.7.0 Biostrings 2.47.9 ggplot2 2.2.1 DNAcopy 1.53.0 AneuFinderData 1.7.0 doParallel 1.0.11 ggdendro 0.1-20 GenomeInfoDb 1.15.5 ReorderCluster 1.0 IRanges 2.13.24 GenomicAlignments 1.15.10 S4Vectors 0.17.31 cowplot 0.9.2 GenomicRanges 1.31.18 mclust 5.4 Rsamtools 1.31.3 reshape2 1.4.3 foreach 1.4.4

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

Source

R
C
C++

Release History