BioConductor

AneuFinder 1.8.0

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Released May 1, 2018 by Aaron Taudt

This package cannot yet be used with Renjin it depends on other packages which are not available: bamsignals 1.12.1 and ecp 3.1.0

Dependencies

ecp 3.1.0 bamsignals 1.12.1 DNAcopy 1.54.0 GenomeInfoDb 1.16.0 AneuFinderData 1.8.0 mclust 5.4.1 foreach 1.4.4 S4Vectors 0.18.3 ggdendro 0.1-20 Rsamtools 1.32.3 ReorderCluster 1.0 reshape2 1.4.3 cowplot 0.9.3 ggplot2 3.0.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 ggrepel 0.8.0 IRanges 2.14.10 doParallel 1.0.11

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

Source

R
C
C++

Release History