BioConductor

AnnotationForge 1.21.1

Code for Building Annotation Database Packages

Released Feb 4, 2018 by Bioconductor Package Maintainer

This package can be loaded by Renjin but 3 out 9 tests failed.

Dependencies

XML 3.98-1.10 RSQLite AnnotationDbi 1.41.4 Biobase 2.39.2 RCurl BiocGenerics 0.25.3 S4Vectors 0.17.40 DBI 0.8

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>AnnotationForge</artifactId>
    <version>1.21.1-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:AnnotationForge')

Test Results

This package was last tested against Renjin 0.9.2622 on Apr 8, 2018.

Source

R

Release History