BioConductor

AnnotationHub 2.8.3

Client to access AnnotationHub resources

Released Oct 17, 2017 by Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]

This package cannot yet be used with Renjin it depends on other packages which are not available: interactiveDisplayBase 1.14.0

Dependencies

interactiveDisplayBase 1.14.0 AnnotationDbi 1.38.2 S4Vectors 0.14.7 BiocInstaller 1.26.1 yaml 2.1.14 BiocGenerics 0.22.1 httr 1.3.1 RSQLite 2.0

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Source

R

Release History