BioConductor

AnnotationHub 2.4.2

Client to access AnnotationHub resources

This package cannot yet be used with Renjin it depends on other packages which are not available: httr 1.2.1 and interactiveDisplayBase 1.10.3

Dependencies

httr 1.2.1 interactiveDisplayBase 1.10.3 S4Vectors 0.10.3 BiocGenerics 0.18.0 RSQLite AnnotationDbi 1.34.4 BiocInstaller 1.22.3

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Source

R

Release History