BioConductor

ArrayExpressHTS 1.22.1

ArrayExpress High Throughput Sequencing Processing Pipeline

This package cannot yet be used with Renjin it depends on other packages which are not available: Hmisc 4.0-2, biomaRt 2.28.0, ShortRead 1.30.0, DESeq 1.24.0, XML 3.98-1.5, Rsamtools 1.24.0, and R2HTML 2.3.2

Dependencies

biomaRt 2.28.0 XML 3.98-1.5 DESeq 1.24.0 ShortRead 1.30.0 Hmisc 4.0-2 Rsamtools 1.24.0 R2HTML 2.3.2 Biostrings 2.40.2 IRanges 2.6.1 svMisc 0.9-70 snow 0.4-2 Biobase 2.32.0 GenomicRanges 1.24.3 edgeR 3.14.0 rJava BiocGenerics 0.18.0 bitops 1.0-6 sampling 2.8 sendmailR 1.2-1 RColorBrewer 1.1-2

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Source

R
C

Release History