BioConductor

ArrayExpressHTS 1.22.1

ArrayExpress High Throughput Sequencing Processing Pipeline

Released Jul 13, 2016 by Angela Goncalves, Andrew Tikhonov

This package cannot yet be used with Renjin it depends on other packages which are not available: DESeq 1.24.0, Hmisc 4.0-3, R2HTML 2.3.2, Rsamtools 1.24.0, ShortRead 1.30.0, XML 3.98-1.7, and biomaRt 2.28.0

Dependencies

biomaRt 2.28.0 XML 3.98-1.7 ShortRead 1.30.0 DESeq 1.24.0 Hmisc 4.0-3 Rsamtools 1.24.0 R2HTML 2.3.2 rJava sampling 2.8 GenomicRanges 1.24.3 snow 0.4-2 sendmailR 1.2-1 edgeR 3.14.0 RColorBrewer 1.1-2 bitops 1.0-6 IRanges 2.6.1 Biostrings 2.40.2 BiocGenerics 0.18.0 Biobase 2.32.0 svMisc 0.9-70

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Source

R
C

Release History