BioConductor

ArrayExpressHTS 1.29.1

ArrayExpress High Throughput Sequencing Processing Pipeline

Released Jan 22, 2018 by Angela Goncalves

This package cannot yet be used with Renjin it depends on other packages which are not available: ShortRead 1.37.5 and R2HTML 2.3.2

Dependencies

ShortRead 1.37.5 R2HTML 2.3.2 Biostrings 2.47.12 sendmailR 1.2-1 IRanges 2.13.28 GenomicRanges 1.31.23 bitops 1.0-6 RColorBrewer 1.1-2 DESeq 1.31.0 Hmisc 4.1-1 Biobase 2.39.2 svMisc 1.0-2 Rsamtools 1.31.3 edgeR 3.21.9 biomaRt 2.35.13 XML 3.98-1.10 BiocGenerics 0.25.3 snow 0.4-2 sampling 2.8 rJava

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Source

R
C

Release History