BioConductor
ArrayExpressHTS 1.30.0
ArrayExpress High Throughput Sequencing Processing Pipeline
Released Apr 30, 2018 by Angela Goncalves
This package cannot yet be used with Renjin it depends on other packages which are not available: R2HTML 2.3.2 and ShortRead 1.38.0
Dependencies
ShortRead 1.38.0 R2HTML 2.3.2 sampling 2.8 XML 3.98-1.16 RColorBrewer 1.1-2 Hmisc 4.1-1 svMisc 1.1.0 DESeq 1.32.0 Rsamtools 1.32.3 edgeR 3.22.3 bitops 1.0-6 Biobase 2.40.0 sendmailR 1.2-1 rJava Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 biomaRt 2.36.1 IRanges 2.14.10 snow 0.4-2
RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets