BioConductor

ArrayTools 1.36.0

geneChip Analysis Package

Released Jul 22, 2009 by Xiwei Wu, Arthur Li

This package can be loaded by Renjin but 8 out 22 tests failed.

Dependencies

limma 3.32.10 Biobase 2.36.2 affy 1.54.0 xtable 1.8-2

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>ArrayTools</artifactId>
    <version>1.36.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:ArrayTools')

Test Results

This package was last tested against Renjin 0.8.2523 on Nov 12, 2017.

Source

R

Release History