BioConductor

ArrayTools 1.39.0

geneChip Analysis Package

Released Jul 22, 2009 by Arthur Li

This package cannot yet be used with Renjin it depends on other packages which are not available: Biobase 2.39.1 and affy 1.57.0 An older version of this package is more compatible with Renjin.

Dependencies

affy 1.57.0 Biobase 2.39.1 limma 3.35.5 xtable 1.8-2

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

Source

R

Release History