BioConductor

AtlasRDF 1.8.0

Gene Expression Atlas query and gene set enrichment package.

Released Jan 26, 2015 by James Malone, Simon Jupp, Maryam Soleimani

This package cannot yet be used with Renjin it depends on other packages which are not available: SPARQL 1.16

Dependencies

SPARQL 1.16 hash 3.0.1

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Source

R

Release History