BioConductor

DEGreport 1.16.0

Report of DEG analysis

Released Mar 27, 2017 by Lorena Pantano

Dependencies

tidyr 0.8.1 dplyr 0.7.6 ComplexHeatmap 1.18.1 circlize 0.4.4 psych 1.8.4 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 ConsensusClusterPlus 1.44.0 edgeR 3.22.3 cowplot 0.9.3 magrittr 1.5 reshape 0.8.7 cluster 2.0.7-1 DESeq2 1.20.0 tibble 1.4.2 Nozzle.R1 1.1-1 stringr 1.3.1 rlang 0.2.2 ggplot2 3.0.0 Biobase 2.40.0 knitr 1.20 scales 1.0.0 BiocGenerics 0.26.0 ggrepel 0.8.0 quantreg 5.36 logging 0.7-103

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Source

Release History

• 1.16.0
• 1.15.4
• 1.15.2
• 1.15.1
• 1.12.0
• 1.8.2
• 1.6.1
• 1.2.0