BioConductor

Doscheda 1.2.0

A DownStream Chemo-Proteomics Analysis Pipeline

Released May 1, 2018 by Bruno Contrino

This package cannot yet be used with Renjin it depends on other packages which are not available: corrgram 1.13, shiny 1.1.0, and d3heatmap 0.6.1.2

Dependencies

shiny 1.1.0 corrgram 1.13 d3heatmap 0.6.1.2 httr 1.3.1 prodlim 2018.04.18 gridExtra 2.3 DT 0.4 stringr 1.3.1 matrixStats 0.54.0 vsn 3.48.1 reshape2 1.4.3 jsonlite 1.5 ggplot2 3.0.0 affy 1.58.0 limma 3.36.2 drc 3.0-1 readxl 1.1.0 shinydashboard 0.7.0 calibrate 1.7.2

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Source

R

Release History