BioConductor
DropletUtils 1.0.3
Utilities for Handling Single-Cell Droplet Data
This package cannot yet be used with Renjin it depends on other packages which are not available: beachmat 1.2.1 and rhdf5 2.24.0
Dependencies
rhdf5 2.24.0 beachmat 1.2.1 SingleCellExperiment 1.2.0 Rhdf5lib 1.2.1 Rcpp BiocParallel 1.14.2 S4Vectors 0.18.3 edgeR 3.22.3 Matrix 1.2-14
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.