BioConductor

GENIE3 1.2.1

GEne Network Inference with Ensemble of trees

Released Apr 27, 2018 by Van Anh Huynh-Thu

This package is available for Renjin and there are no known compatibility issues.

Dependencies

reshape2 1.4.3

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GENIE3</artifactId>
    <version>1.2.1-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GENIE3')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R
C

Release History