BioConductor

GGBase 3.42.0

GGBase infrastructure for genetics of gene expression package GGtools

Released Apr 30, 2018 by VJ Carey

This package can be loaded by Renjin but 6 out 8 tests failed.

Dependencies

snpStats 1.30.0 AnnotationDbi 1.42.1 Biobase 2.40.0 genefilter 1.62.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 digest 0.6.16 IRanges 2.14.10 limma 3.36.2 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Matrix 1.2-14

infrastructure

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GGBase</artifactId>
    <version>3.42.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GGBase')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.