BioConductor

GLAD 2.44.0

Gain and Loss Analysis of DNA

Released Dec 19, 2011 by Philippe Hupe

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 6 out 17 tests failed. An older version of this package is more compatible with Renjin.

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GLAD</artifactId>
    <version>2.44.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GLAD')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

Source

R
C
C++

Release History