BioConductor

GOsummaries 2.16.1

Word cloud summaries of GO enrichment analysis

Released May 19, 2018 by Raivo Kolde

This package can be loaded by Renjin but 3 out 4 tests failed. An older version of this package is more compatible with Renjin.

Dependencies

limma 3.36.1 gtable 0.2.0 ggplot2 2.2.1 gProfileR 0.6.6 Rcpp plyr 1.8.4 reshape2 1.4.3

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GOsummaries</artifactId>
    <version>2.16.1-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GOsummaries')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R
C++

Release History