BioConductor

GRENITS 1.32.0

Gene Regulatory Network Inference Using Time Series

Released Mar 15, 2012 by Edward Morrissey

This package can be loaded by Renjin but 6 out 11 tests failed.

Dependencies

RcppArmadillo 0.8.500.0 ggplot2 2.2.1 Rcpp reshape2 1.4.3

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GRENITS</artifactId>
    <version>1.32.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GRENITS')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R
C
C++

Release History