BioConductor
GSCA 2.10.0
GSCA: Gene Set Context Analysis
Released Dec 8, 2015 by Zhicheng Ji
This package cannot yet be used with Renjin it depends on other packages which are not available: rhdf5 2.24.0 and shiny 1.1.0
Dependencies
shiny 1.1.0 rhdf5 2.24.0 ggplot2 3.0.0 RColorBrewer 1.1-2 gplots 3.0.1 reshape2 1.4.3 sp 1.3-1
GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.