BioConductor

GSEABase 1.42.0

Gene set enrichment data structures and methods

Released Apr 30, 2018 by Bioconductor Package Maintainer

Dependencies

AnnotationDbi 1.42.1 annotate 1.58.0 XML 3.98-1.16 Biobase 2.40.0 BiocGenerics 0.26.0 graph 1.58.0

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GSEABase</artifactId>
    <version>1.42.0-b4</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GSEABase')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.

• CollectionType-class-examples
• CollectionType-constructors-examples
• GSEABase-package-examples
• GeneColorSet-class-examples
• GeneIdentifierType-class-examples
• GeneIdentifierType-constructors-examples
• GeneSet-class-examples
• GeneSet-methods-examples
• GeneSetCollection-class-examples
• GeneSetCollection-methods-examples
• OBOCollection-class-examples
• getOBOCollection-examples
• getObjects-examples
• goSlim-methods-examples
• incidence-methods-examples
• unitTests

Source

Release History

• 1.42.0
• 1.41.3
• 1.41.2
• 1.38.2
• 1.34.1
• 1.34.0
• 1.32.0
• 1.30.2