BioConductor

GWASTools 1.26.1

Tools for Genome Wide Association Studies

Released May 24, 2018 by Stephanie M. Gogarten

This package can be loaded by Renjin but 49 out 70 tests failed.

Dependencies

DBI 1.0.0 DNAcopy 1.54.0 sandwich 2.4-0 quantsmooth 1.46.0 survival 2.42-3 RSQLite Biobase 2.40.0 logistf 1.22 GWASExactHW 1.01 lmtest 0.9-36 gdsfmt 1.16.0

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GWASTools</artifactId>
    <version>1.26.1-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GWASTools')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.