BioConductor

GenRank 1.8.0

Candidate gene prioritization based on convergent evidence

Released May 1, 2018 by Chakravarthi Kanduri

This package can be loaded by Renjin but 1 out 26 tests failed.

Dependencies

survcomp 1.30.0 matrixStats 0.53.1 reshape2 1.4.3

Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GenRank</artifactId>
    <version>1.8.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GenRank')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.