BioConductor

GeneGeneInteR 1.6.0

Tools for Testing Gene-Gene Interaction at the Gene Level

Released May 1, 2018 by Mathieu Emily

This package cannot yet be used with Renjin it depends on other packages which are not available: FactoMineR 1.41, GGtools 5.16.0, and data.table 1.11.4

Dependencies

data.table 1.11.4 GGtools 5.16.0 FactoMineR 1.41 snpStats 1.30.0 GenomicRanges 1.32.6 mvtnorm 1.0-8 kernlab 0.9-27 rioja 0.9-15.1 IRanges 2.14.10 plspm 0.4.9 Rsamtools 1.32.3 igraph 1.2.2

The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.

Source

Release History

1.6.0
1.5.0
1.2.0