BioConductor
GeneStructureTools 1.0.0
Tools for spliced gene structure manipulation and analysis
Released May 1, 2018 by Beth Signal
This package cannot yet be used with Renjin it depends on other packages which are not available: Gviz 1.24.0, rtracklayer 1.40.5, BSgenome.Mmusculus.UCSC.mm10 1.4.0, and data.table 1.11.4
Dependencies
rtracklayer 1.40.5 data.table 1.11.4 BSgenome.Mmusculus.UCSC.mm10 1.4.0 Gviz 1.24.0 Biostrings 2.48.0 GenomicRanges 1.32.6 stringdist 0.9.5.1 stringr 1.3.1 IRanges 2.14.10 S4Vectors 0.18.3 plyr 1.8.4
GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.