BioConductor

GeneticsPed 1.42.0

Pedigree and genetic relationship functions

Released Sep 20, 2007 by David Henderson

Dependencies

genetics 1.3.8.1 MASS 7.3-50 gdata 2.18.0

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>GeneticsPed</artifactId>
    <version>1.42.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:GeneticsPed')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• TDT-examples
• check-examples
• datasets-examples
• doRUnit
• extend-examples
• family-examples
• founder-examples
• geneContribution-examples
• generatePedigree-examples
• generation-examples
• gpi-examples
• gpiUtil-examples
• inbreeding-examples
• model.matrix-examples
• nIndividual-examples
• pedigree-examples
• prune-examples
• relationshipAdditive-examples
• removeIndividual-examples
• sort.pedigree-examples
• summary.pedigree-examples

Source

Release History

• 1.42.0
• 1.41.0
• 1.38.1
• 1.34.0
• 1.32.0
• 1.30.0