BioConductor

GreyListChIP 1.12.0

Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

Released Jan 21, 2018 by Gordon Brown

Dependencies

rtracklayer 1.40.5 BSgenome 1.48.0 GenomeInfoDb 1.16.0 GenomicAlignments 1.16.0 GenomicRanges 1.32.6 MASS 7.3-50 SummarizedExperiment 1.10.1 Rsamtools 1.32.3

Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.

Source

Release History

• 1.12.0
• 1.11.2
• 1.11.0
• 1.8.0
• 1.4.1
• 1.4.0
• 1.2.0
• 1.0.1