BioConductor

Gviz 1.24.0

Plotting data and annotation information along genomic coordinates

Released Apr 30, 2018 by Robert Ivanek

Dependencies

rtracklayer 1.40.5 BSgenome 1.48.0 GenomicFeatures 1.32.2 biovizBase 1.28.2 GenomeInfoDb 1.16.0 latticeExtra 0.6-28 lattice 0.20-35 RColorBrewer 1.1-2 XVector 0.20.0 matrixStats 0.54.0 S4Vectors 0.18.3 Rsamtools 1.32.3 AnnotationDbi 1.42.1 Biobase 2.40.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 biomaRt 2.36.1 digest 0.6.16 IRanges 2.14.10

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Source

Release History

• 1.24.0
• 1.23.3
• 1.23.2
• 1.20.0
• 1.16.5
• 1.14.7
• 1.12.1