BioConductor
LINC 1.8.0
co-expression of lincRNAs and protein-coding genes
Released Mar 18, 2017 by Manuel Goepferich
This package cannot yet be used with Renjin it depends on other packages which are not available: DOSE 3.6.1, clusterProfiler 3.8.1, ReactomePA 1.24.0, ggtree 1.12.7, and sva 3.28.0
Dependencies
DOSE 3.6.1 ReactomePA 1.24.0 clusterProfiler 3.8.1 sva 3.28.0 ggtree 1.12.7 gridExtra 2.3 reshape2 1.4.3 png 0.1-7 Biobase 2.40.0 ggplot2 3.0.0 ape 5.1 org.Hs.eg.db 3.6.0 Rcpp
This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.