BioConductor

MADSEQ 1.6.1

Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

Released Apr 29, 2017 by Yu Kong

This package cannot yet be used with Renjin it depends on other packages which are not available: BSgenome.Hsapiens.UCSC.hg19 1.4.0, rtracklayer 1.40.5, VariantAnnotation 1.26.1, and BSgenome 1.48.0

Dependencies

rtracklayer 1.40.5 BSgenome 1.48.0 VariantAnnotation 1.26.1 BSgenome.Hsapiens.UCSC.hg19 1.4.0 GenomeInfoDb 1.16.0 coda 0.19-1 rjags 4-6 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Rsamtools 1.32.3 VGAM 1.0-6 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 zlibbioc 1.26.0 IRanges 2.14.10 preprocessCore 1.42.0 vcfR 1.8.0

The MADSEQ package provides a group of hierarchical Bayeisan models for the detection of mosaic aneuploidy, the inference of the type of aneuploidy and also for the quantification of the fraction of aneuploid cells in the sample.

Source

R

Release History