BioConductor
MBASED 1.14.0
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Released Aug 27, 2014 by Oleg Mayba
This package cannot yet be used with Renjin it depends on other packages which are not available: SummarizedExperiment 1.10.1
An older version of this package is
more compatible with Renjin.
Dependencies
SummarizedExperiment 1.10.1 BiocParallel 1.14.1 GenomicRanges 1.32.3 RUnit 0.4.32 BiocGenerics 0.26.0
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.