BioConductor

MDTS 1.0.2

Detection of de novo deletion in targeted sequencing trios

This package can be loaded by Renjin but 5 out 8 tests failed.

Dependencies

DNAcopy 1.54.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 stringr 1.3.1 IRanges 2.14.10 Rsamtools 1.32.3

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>MDTS</artifactId>
    <version>1.0.2-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:MDTS')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 27, 2018.