BioConductor

MGFR 1.6.0

Marker Gene Finder in RNA-seq data

Released May 1, 2018 by Khadija El Amrani

This package can be loaded by Renjin but 3 out 4 tests failed.

Dependencies

biomaRt 2.36.0 annotate 1.58.0

The package is designed to detect marker genes from RNA-seq data.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>MGFR</artifactId>
    <version>1.6.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:MGFR')

Test Results

This package was last tested against Renjin 0.9.2643 on May 4, 2018.