BioConductor

MPFE 1.16.0

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Released Nov 28, 2014 by Conrad Burden

This package can be loaded by Renjin but all tests failed.

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>MPFE</artifactId>
    <version>1.16.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:MPFE')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R

Release History