BioConductor

MWASTools 1.4.0

MWASTools: an integrated pipeline to perform metabolome-wide association studies

Released Jun 27, 2016 by Andrea Rodriguez-Martinez

Dependencies

car 3.0-1 ComplexHeatmap 1.18.1 RCurl qvalue 2.12.0 gridExtra 2.3 KEGGREST 1.20.1 ppcor 1.1 SummarizedExperiment 1.10.1 igraph 1.2.2 ggplot2 3.0.0 boot 1.3-20 KEGGgraph 1.40.0 glm2 1.2.1

MWASTools provides a complete pipeline to perform metabolome-wide association studies. Key functionalities of the package include: quality control analysis of metabonomic data; MWAS using different association models (partial correlations; generalized linear models); model validation using non-parametric bootstrapping; visualization of MWAS results; NMR metabolite identification using STOCSY; and biological interpretation of MWAS results.

Source

Release History

• 1.4.0
• 1.3.3
• 1.3.2
• 1.3.0
• 1.0.0