BioConductor

MeSHDbi 1.16.0

DBI to construct MeSH-related package from sqlite file

Released May 1, 2018 by Koki Tsuyuzaki

This package can be loaded by Renjin but 2 out 9 tests failed.

Dependencies

AnnotationDbi 1.42.1 Biobase 2.40.0 BiocGenerics 0.26.0 RSQLite

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>MeSHDbi</artifactId>
    <version>1.16.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:MeSHDbi')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.