BioConductor
MutationalPatterns 1.6.1
Comprehensive genome-wide analysis of mutational processes
Released May 2, 2018 by Francis Blokzijl
This package cannot yet be used with Renjin it depends on other packages which are not available: VariantAnnotation 1.26.1 and NMF 0.21.0
Dependencies
VariantAnnotation 1.26.1 NMF 0.21.0 GenomeInfoDb 1.16.0 S4Vectors 0.18.3 plyr 1.8.4 SummarizedExperiment 1.10.1 ggdendro 0.1-20 reshape2 1.4.3 cowplot 0.9.3 ggplot2 3.0.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 pracma 2.1.4 IRanges 2.14.10
An extensive toolset for the characterization and visualization of a wide range of mutational patterns in base substitution catalogs.