BioConductor
NGScopy 1.14.0
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
This package cannot yet be used with Renjin it depends on other packages which are not available: rbamtools 2.16.11
Dependencies
rbamtools 2.16.11 changepoint 2.2.2 Xmisc 0.2.1
NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.