BioConductor

NuPoP 1.30.0

An R package for nucleosome positioning prediction

Released Jun 24, 2010 by Ji-Ping Wang

This package can be loaded by Renjin but there was an error compiling C/FORTRAN sources and 3 out 4 tests failed.

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>NuPoP</artifactId>
    <version>1.30.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:NuPoP')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

Source

R
Fortran

Release History