BioConductor
Oscope 1.10.0
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Released Jul 28, 2015 by Ning Leng
This package cannot yet be used with Renjin it depends on other packages which are not available: EBSeq 1.20.0
An older version of this package is
more compatible with Renjin.
Dependencies
EBSeq 1.20.0 cluster 2.0.7-1 BiocParallel 1.14.1 testthat 2.0.0
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.