BioConductor

QuasR 1.20.0

Quantify and Annotate Short Reads in R

Released Apr 4, 2018 by Michael Stadler

Dependencies

GenomicFiles 1.16.0 ShortRead 1.38.0 rtracklayer 1.40.5 BSgenome 1.48.0 GenomicFeatures 1.32.2 GenomeInfoDb 1.16.0 Rbowtie 1.20.0 BiocInstaller 1.30.0 S4Vectors 0.18.3 BiocParallel 1.14.2 Rsamtools 1.32.3 Biobase 2.40.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 zlibbioc 1.26.0 IRanges 2.14.10

This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.

Source

Release History

• 1.20.0
• 1.19.4
• 1.19.3
• 1.19.2
• 1.19.1
• 1.19.0
• 1.16.0
• 1.12.0
• 1.10.1
• 1.8.4