BioConductor
TEQC 4.2.0
Quality control for target capture experiments
Released Mar 13, 2018 by Manuela Hummel
This package cannot yet be used with Renjin it depends on other packages which are not available: Biobase 2.40.0
An older version of this package is
more compatible with Renjin.
Dependencies
Biobase 2.40.0 IRanges 2.14.10 hwriter 1.3.2 Rsamtools 1.32.0 BiocGenerics 0.26.0
Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.