BioConductor

TFARM 1.2.0

Transcription Factors Association Rules Miner

Released Jun 21, 2017 by Liuba Nausicaa Martino

This package can be loaded by Renjin but 3 out 21 tests failed.

Dependencies

fields 9.6 GenomicRanges 1.32.3 arules 1.6-1 stringr 1.3.1

It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>TFARM</artifactId>
    <version>1.2.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:TFARM')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.