BioConductor
TSSi 1.26.0
Transcription Start Site Identification
Released Apr 30, 2018 by Julian Gehring
This package can be loaded by Renjin but 7 out 12 tests failed.
Dependencies
plyr 1.8.4 IRanges 2.14.1 minqa 1.2.4 Hmisc 4.1-1 BiocGenerics 0.26.0 Biobase 2.40.0 S4Vectors 0.18.1
Identify and normalize transcription start sites in high-throughput sequencing data.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.bioconductor</groupId>
<artifactId>TSSi</artifactId>
<version>1.26.0-b1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.bioconductor:TSSi')
Test Results
This package was last tested against Renjin 0.9.2643 on May 4, 2018.
- TSSi-package-examples
- TssData-class-examples
- TssNorm-class-examples
- TssResult-class-examples
- asRangedData-methods-examples
- get-methods-examples
- identify-methods-examples
- normalize-methods-examples
- physcoCounts-data-examples
- plot-methods-examples
- segmentize-methods-examples
- subtract-functions-examples