BioConductor

TarSeqQC 1.10.0

TARgeted SEQuencing Experiment Quality Control

Released Apr 9, 2018 by Gabriela Merino

This package cannot yet be used with Renjin because there was a problem building the package using Renjin's toolchain. View Build Log

Dependencies

GenomeInfoDb 1.16.0 Hmisc 4.1-1 openxlsx 4.1.0 S4Vectors 0.18.3 BiocParallel 1.14.2 plyr 1.8.4 Rsamtools 1.32.3 reshape2 1.4.3 cowplot 0.9.3 ggplot2 3.0.0 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 IRanges 2.14.10

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Source

R

Release History