BioConductor

TransView 1.24.0

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Released Apr 30, 2018 by Julius Muller

This package can be loaded by Renjin but 12 out 15 tests failed.

Dependencies

IRanges 2.14.10 GenomicRanges 1.32.3 zlibbioc 1.26.0 gplots 3.0.1 S4Vectors 0.18.2 Rsamtools 1.32.0 BiocGenerics 0.26.0

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>TransView</artifactId>
    <version>1.24.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:TransView')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.