BioConductor

VariantAnnotation 1.26.1

Annotation of Genetic Variants

This package cannot yet be used with Renjin it depends on other packages which are not available: rtracklayer 1.40.5, BSgenome 1.48.0, and GenomicFeatures 1.32.2

Dependencies

rtracklayer 1.40.5 BSgenome 1.48.0 GenomicFeatures 1.32.2 GenomeInfoDb 1.16.0 XVector 0.20.0 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Rsamtools 1.32.3 DBI 1.0.0 AnnotationDbi 1.42.1 Biobase 2.40.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 zlibbioc 1.26.0 IRanges 2.14.10

Annotate variants, compute amino acid coding changes, predict coding outcomes.