BioConductor
VariantAnnotation 1.26.1
Annotation of Genetic Variants
This package cannot yet be used with Renjin it depends on other packages which are not available: rtracklayer 1.40.5, BSgenome 1.48.0, and GenomicFeatures 1.32.2
Dependencies
rtracklayer 1.40.5 BSgenome 1.48.0 GenomicFeatures 1.32.2 GenomeInfoDb 1.16.0 XVector 0.20.0 S4Vectors 0.18.3 SummarizedExperiment 1.10.1 Rsamtools 1.32.3 DBI 1.0.0 AnnotationDbi 1.42.1 Biobase 2.40.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 zlibbioc 1.26.0 IRanges 2.14.10
Annotate variants, compute amino acid coding changes, predict coding outcomes.