BioConductor

affy 1.50.0

Methods for Affymetrix Oligonucleotide Arrays

Released May 4, 2016 by Rafael A. Irizarry, Laurent Gautier, Benjamin Milo Bolstad, and Crispin Miller, Leslie M. Cope, Robert Gentleman, Jeff Gentry, Conrad Halling, Wolfgang Huber, James MacDonald, Benjamin I. P. Rubinstein, Christopher Workman, John Zhang

This package can be loaded by Renjin but 1 out 31 tests failed.

Dependencies

zlibbioc 1.18.0 Biobase 2.32.0 affyio 1.42.0 BiocGenerics 0.18.0 BiocInstaller 1.22.3 preprocessCore 1.34.0

The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>affy</artifactId>
    <version>1.50.0-b21</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:affy')

Test Results

This package was last tested against Renjin 0.8.2442 on Sep 25, 2017.

Source

R
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Release History