BioConductor

affyILM 1.28.0

Linear Model of background subtraction and the Langmuir isotherm

Released Mar 17, 2010 by K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

This package can be loaded by Renjin but 4 out 5 tests failed.

Dependencies

Biobase 2.36.2 gcrma 2.48.0 affxparser 1.48.0 affy 1.54.0

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>affyILM</artifactId>
    <version>1.28.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:affyILM')

Test Results

This package was last tested against Renjin 0.8.2523 on Nov 12, 2017.

Source

R

Release History